Integrating methods for determining length-at-age to improve growth estimates for two large scombrids

Fish growth is commonly estimated from length-at-age data obtained from otoliths. There are several techniques for estimating length-at-age from otoliths including 1) direct observed counts of annual increments; 2) age adjustment based on a categorization of otolith margins; 3) age adjustment based on known periods of spawning and annuli formation; 4) back-calculation to all annuli, and 5) back-calculation to the last annulus only. In this study we compared growth estimates (von Bertalanffy growth functions) obtained from the above five methods for estimating length-at-age from otoliths for two large scombrids: narrow-barred Spanish mackerel (Scomberomorus commerson) and broad-barred king mackerel (Scomberomorus semifasciatus). Likelihood ratio tests revealed that the largest differences in growth occurred between the back-calculation methods and the observed and adjusted methods for both species of mackerel. The pattern, however, was more pronounced for S. commerson than for S. semifasciatus, because of the pronounced effect of gear selectivity demonstrated for S. commerson. We propose a method of substituting length-at-age data from observed or adjusted methods with back-calculated length-at-age data to provide more appropriate estimates of population growth than those obtained with the individual methods alone, particularly when faster growing young fish are disproportionately selected for. Substitution of observed or adjusted length-at-age data with back-calculated length-at-age data provided more realistic estimates of length for younger ages than observed or adjusted methods as well as more realistic estimates of mean maximum length than those derived from backcalculation methods alone

Growth trends of Queensland east coast Spanish mackerel (Scomberomorus commerson) from otolith back-calculations

The growth of narrow-barred Spanish mackerel (Scomberomorus commerson) was examined over a broad spatial scale encompassing the east coast of Queensland, Australia. Our aim was to use back-calculation to identify potential biases in growth estimation, and to provide a more recent estimate of growth for Spanish mackerel on the east coast of Queensland. Growth trends were determined using the body proportional hypothesis (BPH) back-calculation model and compared between back-calculated and observed length-at-age data. The back-calculated von Bertalanffy growth function parameters estimated for males and females, respectively, were L∞ = 1047 mm, K = 0.75, t0 = –0.18 and L∞ = 1248 mm, K = 0.51 and t0 = –0.39. Significant differences in growth of Spanish mackerel sampled among different regions along the east coast were observed. A comparison of back-calculated and observed length-at-age data revealed significant biases in the observed length-at-age data for younger aged fish. Our findings contrast with previous estimates of growth for Spanish mackerel from the east coast of Queensland and highlight the use of back-calculation for the first few annuli as a means of avoiding biases in growth estimation arising from gear selectivity associated with fishery-dependent samples of fast-growing fish

Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics

Life history characteristics were used to determine the stock structure of the polynemid Eleutheronema tetradactylum across northern Australia. Growth, estimated from back-calculated length-at-age from sagittal otoliths, and length at sex change were estimated from samples collected from 12 different locations across western, northern and eastern Australia between 2007 and 2009. Comparison of back-calculated length-at-age, growth and length at sex change between locations revealed significant variation in the life-history characteristics of E. tetradactylum across northern Australia, with significant differences detected in 43 of 45 location comparisons. Differences in otolith size relative to fish length also existed amongst locations. No differences in other morphometric relationships were detected. The results of this study provide evidence for a high degree of spatial population subdivision for E. tetradactylum across northern Australia, the finding of which has implications for E. tetradactylum fisheries throughout its range, and provides a biological basis for spatial management of the species in Australia

Harvest patterns and effort dynamics of indigenous and non-indigenous commercial sectors of the eastern Torres Strait reef line fishery

The reef line fishery (RLF) in eastern Torres Strait (ETS) is unique in that it has both a commercial indigenous sector and a commercial non-indigenous sector. Recently, concerns have been expressed by all stakeholders about the long-term sustainability of the fishery. These concerns have been exacerbated by the lack of detailed catch and effort information from both sectors, which has precluded any formal assessment of the fishery. In this paper, we characterise the harvest patterns and effort dynamics of the indigenous and non-indigenous commercial sectors of the ETS RLF using a range of data sources including commercial logbooks, community freezer records, voluntary logbooks and observer surveys. We demonstrate that bycatch is a significant component of the catch for both sectors and identify substantial differences in harvest patterns and effort dynamics between the sectors. Differences between sectors were observed in species composition and spatial and temporal patterns in catch, effort and catch per unit effort. These results highlight the inherent variation in catch and effort dynamics between the two commercial sectors of the ETS RLF and provide valuable information for the development of future assessments and appropriate management strategies for the fishery. The more reliable estimates of harvest patterns and effort dynamics for both sectors obtained from observer surveys will also assist in resolving issues relating to allocation of reef fish resources in Torres Strait

Population biology of coral trout species in eastern Torres Strait: implications for fishery management

Coral trout (Plectropomus spp.) are the main target species for commercial fishers in the eastern Torres Strait Reef Line Fishery (ETS RLF). The four species of coral trout known to occur in Torres Strait: Plectropomus leopardus, Plectropomus maculatus, Plectropomus areolatus and Plectropomus laevis are currently managed as a single species in Torres Strait, as there is no species-specific biological information available for the region which could be used to assess whether species differ in their response to fishing pressure. The aim of our study was to determine whether it is appropriate (biologically) to manage coral trout in the ETS RLF as a single species group or whether different management arrangements are required for some species. We used catch data and biological data from samples collected by commercial fishers to examine the distribution within Torres Strait and estimate a range of biological parameters for P. leopardus, P. maculatus and P. areolatus. Insufficient P. laevis samples were collected to reliably examine this species. Results indicated that the population biology, particularly the reproductive biology, of P. areolatus was substantially different to both P. leopardus and P. maculatus. Although it is difficult to predict the response to fishing, P. areolatus may be more vulnerable to fishing than P. leopardus and P. maculatus, due to the larger size at sex change observed for this species and the very low proportion of males protected by the current minimum size limit. Therefore, while the common management arrangements for P. leopardus and P. maculatus appear to be adequate for these species, separate management arrangements are needed for the sustainable harvest of P. areolatus populations in the ETS. Specifically, we recommend the introduction of a maximum size limit for P. areolatus, in addition to the current minimum size limit, which may allow a proportion of males some protection from fishing

Age-based demography of humpback grouper Cromileptes altivelis: implications for fisheries management and conservation

The humpback grouper Cromileptes altivelis is listed as Vulnerable on the IUCN Red List because of concerns about unsustainable levels of harvest. Quantitative estimates of life history parameters are scarce, limiting formal assessment of long-term harvest rates and conservation risk and the design of robust management measures. We provide the first estimates of age-based population parameters for C. altivelis, using samples from the Great Barrier Reef (GBR) and Torres Strait, Australia. Population parameters did not differ significantly between regions. The maximum observed age was 19 yr, the von Bertalanffy growth parameters were K = 0.30 yr–1, L∞ = 597 mm, and total mortality rate, estimated from an age-based catch curve, was 0.26 yr–1. Preliminary estimates of natural mortality for the GBR, based on samples from reefs closed to fishing, were 0.23 yr–1 (Hoenig regression) and 0.26 yr–1 (catch curve), suggesting recent fishing mortality was low. C. altivelis was found to be a protogynous hermaphrodite with 50% of individuals being male at length 547 mm and age 9.6 yr. Peak spawning was between October and January. These results contrast with previous perceptions of life history traits of this species and suggest that C. altivelis may not be as vulnerable to managed fishing pressure as previously thought. Notwithstanding this, there remains considerable uncertainty in unfished abundance and average recruitment levels for C. altivelis populations. We consider a combination of management strategies including size limits, effort controls and no-take areas that are likely to be most effective in minimising the conservation risk for C. altivelis populations and provide sustainable yields across the species’ range

Integrating different approaches in the definition of biological stocks: A northern Australian multi-jurisdictional fisheries example using grey mackerel, Scomberomorus semifasciatus

A holistic approach to stock structure studies utilises multiple different techniques on the same individuals sampled from selected populations and combines results across spatial and temporal scales to produce a weight of evidence conclusion. It is the most powerful and reliable source of information to use in formulating resource management and monitoring plans. Few examples of the use of a holistic approach in stock structure studies exist, although more recently this is changing. Using such an approach makes integration of results from each technique challenging. An integrated stock definition (ISD) approach for holistic stock structure studies was developed in this study to aid in the appropriate interpretation of stock structure results to guide the determination of fishery management units. The ISD approach is applied herein to a study of the northern Australian endemic grey mackerel, Scomberomorus semifasciatus (Scombridae). Analyses of genetic (mitochondrial DNA and microsatellites), parasite, otolith stable isotope, and growth data are synthesised to determine the stock structure of S. semifasciatus across northern Australia. Integration of the results from all techniques identified at least six S. semifasciatus stocks for management purposes. Further, the use of the ISD approach provided a simple basis for integrating multiple techniques and for their interpretation. The use of this holistic approach was a powerful tool in providing greater certainty about the appropriate management units for S. semifasciatus. Future stock structure studies investigating spatial management questions in the fisheries context should adopt a holistic approach and apply the ISD approach for a more accurate definition of biological stocks to improve fisheries management

Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure

Otoliths of king threadfin, Polydactylus macrochir were collected from 2007 to 2009 at nine locations across northern Australia representing most of their distributional range and areas where fisheries are active. Measurement of the stable isotope ratios of δO and δC in the sagittal otolith carbonate from assemblages of P. macrochir revealed location-specific signatures and indicated that adult fish sampled from representative sites across their range were significantly different. The significant differences in the isotopic signatures of P. macrochir demonstrated that population subdivision is evident and there is unlikely to be substantial movement of fish among these distinct adult assemblages. The stable isotopic signatures for the fish from the different locations were persistent through time, and therefore it could be concluded that they comprise separate stocks for many of the purposes of fisheries management. The spatial separation of these populations indicates a complex stock structure across northern Australia with stocks of P. macrochir associated with large coastal beaches and embayments on a fine spatial scale. These results indicate that in order to achieve optimal fisheries management, the current spatial management arrangements need to be reviewed, particularly the potential for localised depletion of stocks on small spatial scales. This study has provided further evidence that measurement of the stable isotopes ratios in teleost sagittal otolith carbonate can be a valuable tool in the delineation of fishable stocks or fishery management units of adult fish and that widely distributed fish can nonetheless show strong localised population structure

Accepting final counts from repeat readings of otoliths: should a common criterion apply to the age estimation of fish?

Multiple readings of otoliths are often carried out to assess the repeatability and reliability of increment counts for estimating fish age. Various criteria have been used to assign or discard age estimates from repeated counts when discrepancies occur although the reasons for doing so are usually not stated or justified. Trends in relative frequencies (percentage disagreement, PD) and magnitudes (inter-read discrepancy, IRD) of otolith-count discrepancies were explored for 15 species of fish collected from a range of locations around Australia to explore generality in the best explanatory model(s) for otolith-count discrepancies and, hence, the most appropriate criterion for accepting or rejecting age estimates from multiple-count data. Increasing discrepancies with increasing age, according to a constant per-increment probability of error, was the best-approximating model for 9 of the 15 species for PD data but for only two species for IRD data. Our results indicated disproportionately higher rates of rejection of estimates from older age groups if exact agreement between repeated counts was required for age acceptance. Results varied with the reader, region and the method of otolith reading, indicating that multiple criteria for accepting or rejecting counts from multiple readings may be required among or even within species

Mapping the global influence of published research on industry and innovation

Public research is critical to the economy and society. However, tangible economic and social impact only occurs when research outputs are combined, used and reused with other elements and capabilities, to deliver a product, practice, or service. Assessing the context and influence of scholarship during the dynamic process of innovation rather than measuring ex post impact, may improve performance. With this aim, we integrated and interconnected scholarly citations with global patent literature, and here we offer new tools enabling diverse stakeholders to freely evaluate the influence published research has on the generation and potential use of inventions as reflected by the patent system. We outline an evolving toolkit, Lens Influence Mapping, that allows assessment of individual scholarly works and aggregated outputs of authors for influence on industry and enterprise as measured by citations within patents. This performance measure, applied at many levels and normalized by either research disciplines or technology fields of use, may expose and highlight institutional strength and practices, and guide their future partnership